Data in Biotech

In this episode of Data in Biotech, host Ross Katz sits down with Scott Lipnick, Co-Founder and President of Etiome, to explore how preemptive medicine is changing the way biotech approaches therapeutic modeling and intervention.  Discover how Etiome’s recently launched, AI-driven platform is built to detect disease earlier, identify precise biomarkers, and create stage-specific treatments—all before symptoms arise.  It’s a visionary approach to healthcare focused on preserving health, not just managing illness. What You'll Learn in This Episode: Why Scott Lipnick believes the future of medicine lies in preemptive care.How Etiome uses AI to map disease progression at the cellular level.The role of biomarkers in identifying disease before symptoms surface.How Etiome applies its Temporal Biodynamics platform across diseases.What venture creation looks like at Flagship Pioneering. Meet Our Guest Scott Lipnick is the Co-founder and President of Etiome. At the forefront of preemptive medicine, Scott’s work focuses on predicting disease progression and delivering personalized, early-stage interventions using cutting-edge AI and molecular tools. About The Host Ross Katz is Principal and Data Science Lead at CorrDyn. Ross specializes in building intelligent data systems that empower biotech and healthcare organizations to extract insights and drive innovation. Connect with Our Guest: Sponsor: CorrDyn, a data consultancyFind out more about EtiomeConnect with Scott on LinkedIn Connect with Us: Follow the podcast for more insightful discussions on the latest in biotech and data science.Subscribe and leave a review if you enjoyed this episode! Sponsored by… This episode is brought to you by CorrDyn, the leader in data-driven solutions for biotech and healthcare. Discover how CorrDyn is helping organizations turn data into breakthroughs at CorrDyn.

In this episode of Data in Biotech, host Ross Katz speaks with Patrick Torbey, CEO and Co-Founder of Neoplants, about using genetic engineering and microbiome innovation to tackle indoor air pollution. Patrick explains how Neoplants is turning everyday houseplants into powerful air purifiers using synthetic biology, offering insights into VOC degradation, enzyme pathways, and data-driven R&D. ​​What You'll Learn in This Episode: How genetically modified plants and microbiomes can reduce indoor air pollution by targeting VOCs like formaldehyde and benzeneThe scientific and engineering challenges of modifying indoor plants at the genomic levelWhy data-driven testing and simulation are critical to optimizing plant function and user impactThe role of synthetic biology in creating sustainable, scalable biotech productsPatrick’s vision for solving climate challenges through engineered plant ecosystems ​​Meet Our Guest: Patrick Torbey is the CEO and Co-Founder of Neoplants, a Paris-based biotech startup engineering plants to purify indoor air. With a PhD in genetic editing and deep expertise in synthetic biology, Patrick leads Neoplants in building functional, aesthetically unique, and sustainable plant systems for the future. About The Host: Ross Katz is the Principal Data Scientist at CorrDyn. He brings decades of experience across biotech, energy, and non-profit sectors, with a focus on building smarter data systems, machine learning pipelines, and actionable insights for complex industries. Connect with Our Guest: Sponsor: CorrDyn, a data consultancyFind out more about NeoplantsConnect with Patrick Torbey on LinkedIn Connect with Us: Follow the podcast for more insightful discussions on the latest in biotech and data science.Subscribe and leave a review if you enjoyed this episode!

Phage therapy is stepping into the spotlight as antibiotic resistance rises - and Jessica Sacher is helping lead the charge. In this episode, Ross Katz speaks with Jessica, Co-Founder of Phage Directory and Staff Scientist at Stanford, about sourcing phages, operationalizing therapy, and predicting efficacy through data. This conversation explores how personalized phage therapy works, its scalability, and the data challenges shaping its future. ​​What You'll Learn in This Episode: Why phage therapy is a promising solution to antibiotic-resistant infectionsHow Phage Directory connects researchers and clinicians to accelerate treatmentWhat operational hurdles exist in scaling personalized phage productionHow data science is being applied to predict effective phage-bacteria matchesWhy building infrastructure and awareness is essential to adoption in clinical care Connect with Our Guest: Sponsor: CorrDyn, a data consultancyFind out more about Phage DirectoryConnect with Jessica on LinkedIn Connect with Us: Follow the podcast for more insightful discussions on the latest in biotech and data science.Subscribe and leave a review if you enjoyed this episode! Resources Mentioned:  Why Language Itself Might Be Holding Back AI – by Ross Katz: https://www.linkedin.com/pulse/why-language-itself-might-holding-back-ai-ross-katz-rcl9e/?trackingId=Y6%2FH45W%2BxImfl%2By2geB6%2Bg%3D%3DBacteriophage Therapy for Multidrug-Resistant Infections – PubMed: https://pubmed.ncbi.nlm.nih.gov/40026251/Cystic Fibrosis Australia and Phage Australia Survey – medRxiv: https://www.medrxiv.org/content/10.1101/2024.05.14.24307275v1Phage Directory: https://phage.directory/

How do you drug the undruggable? In this episode of Data in Biotech, Ross Katz sits down with Will Fondrie, Head of Data Science and Engineering at Talus Bio, to explore how machine learning, mass spectrometry, and innovative computational models are transforming drug discovery. Learn how Talus Bio is targeting transcription factors—once considered out of reach—with scalable, high-impact data science. What You'll Learn in This Episode Why transcription factors are historically hard to drug and how Talus Bio is changing thatHow mass spectrometry offers high-throughput, unbiased views of protein-DNA interactionsThe role of recommender systems in prioritizing compound testingStrategies for balancing build vs. buy in data infrastructure at scaleWhy open-source software is essential for scientific transparency and progress Links: Find out more about Talus Bio: https://talus.bioConnect with Ross Katz on LinkedIn: https://www.linkedin.com/in/b-ross-katz/ Connect with Will Fondrie on LinkedIn: https://www.linkedin.com/in/wfondrie/ Meet Our Guest Will Fondrie is the Head of Data Science and Engineering at Talus Bio, a biotech company pioneering the development of small molecule drugs targeting transcription factors. With a PhD in molecular medicine and a background in proteomics, Will brings deep expertise in computational biology, machine learning, and scalable data systems. About the Host Ross Katz is the Principal and Data Science Lead at CorrDyn. He hosts Data in Biotech to spotlight innovative thinkers and data-driven leaders pushing the boundaries of biotechnology. Enjoying the show? If you liked this episode, consider sharing it with a colleague and exploring more conversations at Data in Biotech. Your support helps us keep delivering expert insights on the future of biotech. Sponsored by CorrDyn This episode is brought to you by CorrDyn, a leader in data-driven solutions for biotech and healthcare. Learn more at CorrDyn.

Dr. Jonathan Usuka, CEO of Sapient and expert in bioinformatics, dives into the transformative world of proteomics and metabolomics. He breaks down the complexities of the dark proteome and how understanding these uncharacterized proteins can enhance drug discovery. The conversation highlights the need for longitudinal patient sampling and robust conclusions for biopharma. Usuka also discusses the FDA's evolving perspective on real-world data, crucial for advancing personalized medicine and patient care in biotechnology.

How can AI improve clinical trials and accelerate drug development?  In this episode of Data in Biotech, Ross Katz sits down with Patrick Leung, CTO of Faro Health, to explore how AI-driven tools are reshaping clinical trial design. Patrick shares insights into document generation, patient burden analysis, and AI governance in biotech.  Learn how Faro Health is developing clinical protocols and leveraging AI to optimize trial success while ensuring regulatory compliance. Whether you're in biotech or healthcare, this conversation offers valuable takeaways on the future of AI in increasing clinical trial efficiency.  What You'll Learn in This Episode: How AI is used to generate clinical trial protocols and reduce inefficiencies.The role of AI in assessing patient burden and optimizing trial designs.How data model development enables specialized biomedical AI workflows.How large language models (LLMs) support clinical trial automation.Future trends in AI-driven clinical trial optimization. Links: Find out more about Faro Health: https://www.farohealth.comConnect with Ross Katz on LinkedIn: https://www.linkedin.com/in/b-ross-katz/ Connect with Patrick Leung on LinkedIn: https://www.linkedin.com/in/puiwah/ Meet Our Guest: Patrick Leung is the Chief Technology Officer at Faro Health, where he leads AI-driven innovations in clinical trial design. With a background in data science and software engineering from companies like Google and Two Sigma, Patrick brings a fresh perspective to life sciences, focusing on optimizing clinical trials through AI and structured data models. About the Host: Ross Katz is the Principal and Data Science Lead at CorrDyn, specializing in applying data science to biotech and healthcare. As the host of Data in Biotech, Ross explores the latest trends and innovations shaping the industry. Enjoying the Show? Visit Faro Health to learn more about AI-driven clinical trial optimization. Don’t forget to rate and review Data in Biotech on Apple Podcasts! Sponsored by CorrDyn This episode is brought to you by CorrDyn, a leader in data-driven solutions for biotech and healthcare. Learn more at CorrDyn.

In this episode of Data In Biotech, Ross Katz interviews Naren Tallapragada, CEO and Co-founder of Tessel Bio, about his background in electrical engineering and physics and how personal circumstances led to him pivoting his focus to enter biotech and start Tessel Bio. Naren breaks down Tessel Bio’s unique approach to drug discovery, which involves "reverse engineering" chronic diseases. Instead of starting with a potential drug and testing its effects, they begin with a clear picture of the disease itself—specifically, how it appears and behaves in the body. A key part of their method is using human organoids—tiny, lab-grown versions of human tissues—to closely replicate real diseases and see how different treatments interact with them. This “small data” approach is made substantially more efficient with the addition of active learning. Join us for a fascinating conversation about Tessel Bio’s approach to finding cures for chronic diseases that impact hundreds of thousands of people every day.  ​​What You'll Learn in This Episode: Naren’s journey into biotech and personal motivationUnderstanding Tessel Bio's approach to drug discoveryThe role of organoids in disease modelingData gathering and target identification strategiesActive learning in drug discovery at Tessel Bio Connect with Our Guest: Sponsor: CorrDyn, a data consultancyFind out more about Tessel Bio Connect with Naren on LinkedIn Connect with Us: Follow the podcast for more insightful discussions on the latest in biotech and data science.Subscribe and leave a review if you enjoyed this episode!

Alexander Junge, Co-founder and CTO of amass, brings a wealth of bioinformatics experience from Novo Nordisk and Cordy AI. He discusses how amass leverages AI to help researchers navigate the complexities of scientific data. Alex dives into the challenges of information retrieval and emphasizes the importance of design and user experience in scientific tools. He shares insights on collaboration between AI and human expertise, and predicts the transformative impact of AI on scientific discovery in the coming decade.

Dipen Sangurdekar, VP of Data Sciences at KSQ Therapeutics, dives into the innovative fusion of data science with gene and cell therapy. He shares his transition from engineering to oncology, highlighting the integration of computational techniques in therapeutic design. The discussion covers advancements in CRISPR technology, emphasizing its potential for personalized medicine and the challenges of patient variability. Dipen stresses the importance of collaboration between data scientists and biologists to refine therapeutic models, underscoring the critical role of data in drug development.

This week on Data in Biotech, we welcome Timothy Jenkins, the Head of Data Science and Associate Professor at DTU Bioengineering, a leading scientific community dedicated to advancing areas of biotechnology, food technology, and health through innovative teaching and research.  Timothy starts the conversation by walking us through his background and early career beginnings, from the first time he expressed interest in zoology and venomous snakes to now leading a research group focused on AI-guided drug discovery for snake antivenom. He and our host, Ross Katz, dive into one of DTU’s most exciting recent publications about "de novo" designed proteins to neutralize lethal snake venom toxins.  Inspired by Nobel Prize winner David Baker’s groundbreaking paper and in collaboration with the Baker Lab on computational design methodology, this project holds great promise in therapeutic discovery and drug development. Tim explains how computational protein design and protein structure prediction are revolutionizing his field, highlighting compelling examples and milestones from his research on antivenom. He also provides an overview of the process used to discover new antivenoms, including the sourcing of biological data, model training, and integration of experimental feedback. Finally, we get Tim’s perspective on the future of AI-powered therapeutic discovery, and his take on the integration of quantum computing into protein design. Data in Biotech is a fortnightly podcast exploring how companies leverage data innovation in the life sciences. Useful Links Nature - De novo designed proteins neutralize lethal snake venom toxins Timothy’s LinkedIn DTU Bioengineering Website UW Institute for Protein Design “de novo” designed proteins project Information on Nobel Prize winner David Baker