How to cluster tabular data with Markov Clustering (Ep. 73)

In this episode I explain how a community detection algorithm known as Markov clustering can be constructed by combining simple concepts like random walks, graphs, similarity matrix. Moreover, I highlight how one can build a similarity graph and then run a community detection algorithm on such graph to find clusters in tabular data.

You can find a simple hands-on code snippet to play with on the Amethix Blog 

Enjoy the show! 

 

References

[1] S. Fortunato, “Community detection in graphs”, Physics Reports, volume 486, issues 3-5, pages 75-174, February 2010.

[2] Z. Yang, et al., “A Comparative Analysis of Community Detection Algorithms on Artificial Networks”, Scientific Reports volume 6, Article number: 30750 (2016)

[3] S. Dongen, “A cluster algorithm for graphs”, Technical Report, CWI (Centre for Mathematics and Computer Science) Amsterdam, The Netherlands, 2000.

[4] A. J. Enright, et al., “An efficient algorithm for large-scale detection of protein families”, Nucleic Acids Research, volume 30, issue 7, pages 1575-1584, 2002.