Jordi Mata-Fink, co-founder of Gate Bioscience, discusses their work on commercializing a novel class of therapeutics called 'molecular gates' targeting extracellular proteins. He explores the power of platform-based problem-solving and team building in biotech startups, as well as the potential of small molecules to overcome therapeutic challenges. The episode also delves into the secretory translocon and the opportunities it presents for therapeutic intervention.
Gate BioScience is developing molecular gates that can block disease-causing extracellular proteins, offering new therapeutic possibilities.
Molecular gates can be taken orally and cross the blood-brain barrier, providing convenient treatment options for a wide range of diseases.
Deep dives
Overview of Gate BioScience and Molecular Gates
Gate BioScience is developing a new class of therapeutics called molecular gates that can eliminate disease-causing extracellular proteins. Extracellular proteins, which leave the cell and float around in the body or sit on the cell membrane, can cause various diseases. Gate's molecular gates bind to the secretory translocon, a channel that all extracellular proteins must go through, and block disease-causing proteins from passing through. This process redirects the protein back into the cell where it is recognized as mis-localized and degraded. Unlike injectable biologics, molecular gates are small molecules that can be taken orally, making them more convenient and enabling them to access tissues, including the brain, that are difficult for biologics to reach. By targeting extracellular proteins with small molecules, Gate offers new therapeutic possibilities for a wide range of diseases.
The Potential Impact of Molecular Gates
Gate's molecular gates have the potential to revolutionize the treatment of diseases caused by extracellular proteins. Previously, therapies targeting extracellular proteins were predominantly injectable biologics, such as monoclonal antibodies or RNA drugs. However, these approaches have limitations in terms of convenience and accessing certain tissues. Molecular gates, on the other hand, can be taken orally and can cross the blood-brain barrier to reach the brain. This opens up new possibilities for more convenient treatment options for patients with inflammation, autoimmune diseases, and neurodegenerative diseases, as well as diseases caused by extracellular proteins that are difficult to address with current therapies. The small molecule approach of molecular gates provides a powerful alternative for patients and expands the range of diseases that can be therapeutically targeted.
Building the Gate BioScience Platform
Gate BioScience is building a robust platform to develop and optimize molecular gates for therapeutic applications. The platform focuses on the secretary translocon, a highly conserved channel through which all extracellular proteins must pass. By understanding the process and mechanism of how molecular gates interact with the secretary translocon, Gate can create a library of molecules and study their effects on the secretion of different extracellular proteins. This approach leverages computational biology, artificial intelligence, and machine learning to generate a richly annotated dataset and gain insights into translocation and molecular gate mechanisms. The platform's flexibility allows Gate to apply its learnings to future programs, enabling faster, cheaper, and smarter development of therapies targeting different disease-causing extracellular proteins.
Jordi Mata-Fink, PhD, cofounder of Gate Bioscience, joins Vineeta Agarwala and Ben Portney of a16z Bio + Health.
In this episode, Jordi discusses how he and his cofounders are working to commercialize a novel class of therapeutics, termed 'molecular gates.' His company, Gate, is working to exploit a previously uncharted avenue in cell biology—the secretory translocon—for therapeutic intervention. This approach has the potential to combat diseases otherwise resistant to existing therapeutics.
Jordi also imparts valuable insights on the power of platform-based problem-solving and team building.
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