The Stem Cell Podcast

Ep. 54: Stem Cell Lineage Tracing Featuring Dr. Andrew Cohen

Sep 29, 2015
Dr. Andrew Cohen, an engineer and associate professor at Drexel University, dives into the fascinating world of stem cell lineage tracing using innovative software. He explains how time-lapse imaging reveals complex cellular behaviors and their eventual fates. Andrew also discusses the significance of tracking stem cell divisions, the differences between various types of neural stem cells, and how his tools like LEVER and CloneView aid in this research. Plus, he shares some light-hearted anecdotes from his career, making the science both enlightening and entertaining!
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INSIGHT

Transforming Cell Movies Into Lineage Data

  • Andrew Cohen builds software to convert time-lapse microscopy into lineage trees that reveal parent–child cell relationships.
  • This transforms movies of dividing cells into quantitative data for stem cell behavior analysis.
INSIGHT

Think Of Clones As Multidimensional Time Series

  • Cohen frames a clone as a family tree and treats cell behavior as multidimensional time sequences requiring new math.
  • He emphasizes avoiding simple averages because heterogeneity carries key biological signals.
INSIGHT

2D Imaging Creates Ambiguities In Lineaging

  • Tracking interacting cells over time is hard because cells press against and crawl under each other in 2D.
  • Accurate lineage requires solving ambiguity from division, contact, and spatial overlap.
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