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Tinder Box
Tinder box allows you to focus on the act of building the graph as opposed to what the final thing is going to look like. Underneath the hood, the linkages start naturally materializing through the semantic utilities that Tinder box provides because it's leveraging the Microsoft OS natural language capabilities. Devin think is one of the best tools I've found for interrogating already published works, PowerPoints, PDF files, reports. Pandock is an open source tool that enables you on Mac to take any text output, beat it through its engine and output anything you want. And then a third pillar tool is Zotero, which is my citation management tool.